P54929

PR
Gene name
nifA
Protein name
Nif-specific regulatory protein
Names
Species
Azospirillum lipoferum
KEGG Pathway
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

423-522 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for P54929

Entry ID Method Resolution Chain Position Source
AF-P54929-F1 Predicted AlphaFoldDB

No variants for P54929

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for P54929

No associated diseases with P54929

7 regional properties for P54929

Type Name Position InterPro Accession
domain RNA polymerase sigma factor 54 interaction domain 203 - 431 IPR002078
domain DNA binding HTH domain, Fis-type 583 - 620 IPR002197
domain GAF domain 28 - 181 IPR003018
domain AAA+ ATPase domain 223 - 366 IPR003593
binding_site Sigma-54 interaction domain, ATP-binding site 1 227 - 240 IPR025662
binding_site Sigma-54 interaction domain, ATP-binding site 2 289 - 304 IPR025943
conserved_site Sigma-54 interaction domain, conserved site 415 - 424 IPR025944

Functions

Description
EC Number
Subcellular Localization
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

No GO annotations of cellular component

Name Definition
No GO annotations for cellular component

4 GO annotations of molecular function

Name Definition
ATP binding Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
DNA-binding transcription factor activity A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
metal ion binding Binding to a metal ion.
sequence-specific DNA binding Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

2 GO annotations of biological process

Name Definition
nitrogen fixation The process in which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.
phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MPGAMRQSTS NLELLTIYEV SKILGSSLDL QQTLREVLRA LAYQLQMHRG RVYLVGEDNV
70 80 90 100 110 120
LRLVAANGLS NEAAAQIEFR DGEGITGRIL KTGMPAVVPN LAEEPLFLNR TGGREDLDEQ
130 140 150 160 170 180
VASLVGVPIK AAGVVVGVLT IDRISDEGPQ GHFGSDVRFL TMVANLIGQT VRLPHVAEEP
190 200 210 220 230 240
LRDAETFRMQ KELRPIAAPI NDVVCTSPNM LEVMAQVHRV APFKSTVLIR GESGTGKELI
250 260 270 280 290 300
ARAIHNMSPR KDAPFIRVNC AALPESLLES ELFGHEKGAF TGAQKDHKGR FELASGGTLF
310 320 330 340 350 360
LDEIGDISPN FQAKLLRVLQ EQEFERVGGS KTIKTDVRLI CATNLNLEEA IGHGKFRADL
370 380 390 400 410 420
YFRINVVTIH LPPLRERRQD IGPLARHFVA KFAKDNGMTL VMEDEALEVL NRCTWPGNVR
430 440 450 460 470 480
ELENCIERAA TQSRDGIIRT ESLSCSLNLC NSSVLFQYRT LGASVGGLAP SMGPGSVNRV
490 500 510 520 530 540
PPGRPGVPAP ANAPKAPAMP APVPEPAGAG SAWPACASGC SAGPSPVCGA AQPAVPVPLI
550 560 570 580 590 600
PLPLPEPSAP AAAAPAPTSV TNAAPPPAAE VPLDEPESGS LRDRLLWAME RTGWVQAKAA
610 620
RLLGMTTRQV SYALRKYNIE IKRF