P53602
Gene name |
MVD (MPD) |
Protein name |
Diphosphomevalonate decarboxylase |
Names |
Mevalonate (diphospho)decarboxylase, MDDase, Mevalonate pyrophosphate decarboxylase |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:4597 |
EC number |
4.1.1.33: Carboxy-lyases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
2 structures for P53602
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 3D4J | X-ray | 240 A | A/B | 1-400 | PDB |
| AF-P53602-F1 | Predicted | AlphaFoldDB |
474 variants for P53602
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA397083952 rs1597381715 RCV000791135 |
43 | L>P | Porokeratosis 7, multiple types [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
VAR_075052 rs200033380 CA8228989 |
101 | P>R | POROK7; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA8228974 VAR_075053 rs776358937 |
128 | A>V | POROK7; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
| VAR_075054 | 161 | R>L | POROK7; unknown pathological significance [UniProt] | Yes | UniProt |
|
rs144010349 CA8228887 VAR_075055 |
161 | R>Q | POROK7; 1000-fold diminution in diphosphomevalonate decarboxylase activity [UniProt] | Yes |
ClinGen UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
CA8228778 rs770939767 VAR_075056 |
228 | R>Q | POROK7; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
|
VAR_075057 rs776684503 CA8228779 |
228 | R>W | POROK7; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
|
RCV000239486 CA8228757 VAR_075058 rs761991070 |
249 | F>S | Porokeratosis 7, multiple types (porok7) Porokeratosis 7, multiple types POROK7 [Ensembl, ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
|
VAR_075059 CA8228726 rs755948940 RCV000239520 |
292 | N>S | Porokeratosis 7, multiple types (porok7) Porokeratosis 7, multiple types POROK7 [Ensembl, ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
|
VAR_075060 rs764836183 |
371 | I>missing | POROK7; unknown pathological significance [UniProt] | Yes |
UniProt dbSNP |
|
VAR_075060 rs764836183 |
371 | I>del | POROK7; unknown pathological significance [UniProt] | Yes |
UniProt dbSNP |
|
VAR_075061 CA397069041 rs546127665 CA8228584 |
376 | G>R | POROK7; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt 1000Genomes ExAC dbSNP gnomAD |
|
CA8229191 rs779249091 |
2 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs891182332 CA286369665 |
3 | S>T | No |
ClinGen gnomAD |
|
|
CA8229190 rs562445217 |
3 | S>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8229189 rs754033758 |
4 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs1473072747 CA397087864 |
6 | P>A | No |
ClinGen gnomAD |
|
|
CA8229188 rs200621321 |
6 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200621321 CA8229187 |
6 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397087849 rs767956332 |
7 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs1567619842 CA397087831 |
7 | L>P | No |
ClinGen Ensembl |
|
|
CA8229184 rs762416390 |
8 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1215621773 CA397087817 |
8 | A>V | No |
ClinGen gnomAD |
|
|
CA397087808 rs1281597517 |
9 | A>T | No |
ClinGen gnomAD |
|
|
CA8229182 rs142431370 |
9 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1292271942 CA397087794 |
10 | V>I | No |
ClinGen gnomAD |
|
|
CA8229180 rs776161415 |
11 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA286369596 rs746844528 |
12 | C>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8229178 rs746844528 |
12 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746844528 CA8229179 |
12 | C>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397087697 rs1161455426 |
13 | T>K | No |
ClinGen gnomAD |
|
|
CA397087685 rs1457805038 |
14 | A>P | No |
ClinGen gnomAD |
|
|
rs1417470755 CA397087663 |
14 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs779091740 CA8229174 |
15 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8229175 rs748114480 |
15 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1485217002 CA397087628 |
16 | V>I | No |
ClinGen gnomAD |
|
|
rs532101272 CA397087521 |
19 | A>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs532101272 CA8229172 |
19 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1231003112 CA397087485 |
20 | V>D | No |
ClinGen gnomAD |
|
|
rs1272185055 CA397087500 |
20 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
rs201991933 CA8229169 |
21 | I>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8229170 rs201991933 |
21 | I>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs763983653 CA8229120 |
24 | W>* | No |
ClinGen ExAC gnomAD |
|
|
rs1372448845 CA397084554 |
24 | W>C | No |
ClinGen gnomAD |
|
|
rs1186548447 CA397084526 |
25 | G>D | No |
ClinGen gnomAD |
|
|
rs200509037 CA8229119 |
27 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs775511232 CA8229118 |
27 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775511232 COSM404692 CA397084467 |
27 | R>L | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA286366790 rs200509037 |
27 | R>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8229115 rs776801976 |
28 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA286366760 rs967736143 |
29 | E>K | No |
ClinGen TOPMed |
|
|
CA397084305 rs1231355218 |
31 | L>V | No |
ClinGen TOPMed |
|
|
CA8229111 rs141900581 |
35 | I>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs748541115 CA397084215 |
36 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748541115 CA8229110 |
36 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397084176 rs1366538026 |
38 | S>Y | No |
ClinGen gnomAD |
|
|
rs146412581 CA8229107 |
41 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1405767758 CA397084020 |
42 | T>P | No |
ClinGen gnomAD |
|
|
CA8229106 rs780873932 |
46 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397083749 rs756932893 |
47 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397083768 rs1167688147 |
47 | Q>R | No |
ClinGen TOPMed |
|
|
CA286366355 CA8229084 rs752585992 |
48 | L>* | No |
ClinGen ExAC gnomAD |
|
|
rs1597381172 CA397082645 |
50 | T>P | No |
ClinGen Ensembl |
|
|
rs1597381167 CA397082640 |
51 | T>P | No |
ClinGen Ensembl |
|
|
rs1286019179 CA397082631 |
52 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1411462733 CA397082628 |
53 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs11556525 CA286366340 |
53 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1411462733 CA397082629 |
53 | T>P | No |
ClinGen TOPMed gnomAD |
|
|
CA397082625 rs11556525 |
53 | T>R | No |
ClinGen TOPMed gnomAD |
|
|
CA8229083 rs764961928 |
54 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs200435526 CA8229081 |
55 | V>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs369603174 CA8229079 |
57 | S>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8229078 rs773279830 |
57 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8229077 rs375979090 |
59 | D>H | No |
ClinGen ESP ExAC gnomAD |
|
|
CA8229076 rs202087443 |
61 | T>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA286366317 rs1012064332 |
62 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA8229073 rs749757442 |
63 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs1597381106 CA397082564 |
63 | D>Y | No |
ClinGen Ensembl |
|
|
COSM3402539 CA8229070 rs746569295 |
64 | R>Q | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8229071 rs770561548 |
64 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs200434281 CA8229069 |
66 | W>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA397082540 rs1296450498 |
67 | L>V | No |
ClinGen TOPMed |
|
|
rs371763667 CA8229068 |
68 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs778700499 CA8229066 |
69 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA8229065 rs754779116 |
70 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774779770 CA8229064 |
70 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397082524 rs754779116 |
70 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA286366291 rs1043766216 |
73 | D>E | No |
ClinGen TOPMed |
|
|
CA397082503 rs1434498625 |
73 | D>Y | No |
ClinGen gnomAD |
|
|
CA8229063 rs766367485 |
74 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA8229062 rs756168102 |
75 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762031727 CA8229059 |
77 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1425874673 CA397082447 |
77 | P>S | No |
ClinGen gnomAD |
|
|
rs528393793 CA286366267 |
78 | R>L | No |
ClinGen 1000Genomes gnomAD |
|
| TCGA novel | 78 | R>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs528393793 CA286366268 |
78 | R>Q | No |
ClinGen 1000Genomes gnomAD |
|
|
rs2279258 CA8229057 |
78 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8229054 rs149300368 |
80 | Q>* | No |
ClinGen ESP ExAC TOPMed |
|
|
rs746384333 CA8229053 |
80 | Q>P | No |
ClinGen ExAC |
|
| TCGA novel | 81 | A>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA397082360 rs1465103764 |
81 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8229051 rs772737070 |
82 | C>S | No |
ClinGen ExAC gnomAD |
|
|
CA8229050 rs771486207 |
83 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA8229047 rs200508667 |
84 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs150594289 CA8229048 |
84 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8229046 rs199644137 |
85 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs961657047 CA286366248 |
85 | E>G | No |
ClinGen Ensembl |
|
|
CA397082294 rs887405693 |
85 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA286366251 rs887405693 |
85 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA8229006 rs201753135 |
87 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200100993 CA8229005 |
87 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs376547753 CA397082085 |
88 | C>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8229003 rs376547753 |
88 | C>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8229002 rs138188988 |
90 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8229001 rs138188988 |
90 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs766800711 CA8229000 |
91 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs544260643 CA286365976 |
91 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs544260643 CA8228998 |
91 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766800711 CA8228999 |
91 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA397082028 rs1339274565 |
92 | K>N | No |
ClinGen gnomAD |
|
|
CA8228996 rs763584695 |
93 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs370626160 CA8228997 |
93 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs990486879 CA286365967 |
94 | R>K | No |
ClinGen gnomAD |
|
|
CA286365964 rs376949804 |
97 | R>P | No |
ClinGen ESP ExAC TOPMed |
|
|
CA8228993 rs376949804 |
97 | R>Q | No |
ClinGen ESP ExAC TOPMed |
|
|
CA8228994 rs370555660 |
97 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397081916 rs1299463719 |
100 | D>Y | No |
ClinGen TOPMed |
|
|
CA8228990 rs200033380 |
101 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs776247940 CA8228991 |
101 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1597380561 CA397081853 |
104 | S>P | No |
ClinGen Ensembl |
|
|
CA286365946 rs759727451 |
105 | S>I | No |
ClinGen TOPMed gnomAD |
|
|
CA8228987 rs772270252 |
106 | L>F | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 106 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs539888157 CA8228986 |
107 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1210666990 CA397081796 |
108 | C>Y | No |
ClinGen TOPMed gnomAD |
|
|
rs147252211 CA397081750 |
112 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8228985 rs147252211 |
112 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1425276990 CA397081738 |
113 | A>T | No |
ClinGen TOPMed |
|
|
CA8228983 rs372683488 |
114 | S>L | Variant assessed as Somatic; 0.0001408 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs756532159 CA8228981 |
115 | V>L | No |
ClinGen ExAC gnomAD |
|
|
TCGA novel rs1054893298 CA397081676 |
116 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen TOPMed gnomAD NCI-TCGA |
|
CA8228980 rs750927121 |
117 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs768053006 CA8228979 |
117 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397081629 rs1318527715 |
119 | P>S | No |
ClinGen gnomAD |
|
|
rs757884457 CA8228978 |
120 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752101138 CA8228977 |
122 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA8228975 rs759042018 |
123 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs1186810845 CA397081508 |
126 | S>F | No |
ClinGen gnomAD |
|
|
CA397081474 rs1453920636 |
128 | A>S | No |
ClinGen TOPMed |
|
|
CA397081449 rs1198357889 |
129 | A>T | No |
ClinGen gnomAD |
|
|
rs370500274 CA8228972 |
129 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs773248491 CA8228971 |
130 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs772182538 CA8228970 |
131 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
rs1301483388 CA397081280 |
134 | L>V | No |
ClinGen gnomAD |
|
|
CA8228919 rs764142394 |
136 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397080082 rs762821371 |
137 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA397080098 rs1597379412 |
137 | T>P | No |
ClinGen Ensembl |
|
|
CA8228918 rs762821371 |
137 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs969969487 CA286365077 |
138 | L>V | No |
ClinGen TOPMed |
|
|
rs1428559825 CA397080051 |
139 | A>T | No |
ClinGen gnomAD |
|
|
rs143689631 CA8228917 |
140 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397079994 rs1171905332 |
140 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1453366567 CA397079958 |
141 | V>D | No |
ClinGen Ensembl |
|
|
CA8228914 rs148982299 |
142 | Y>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs771195919 CA8228913 |
143 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772577920 CA8228910 |
144 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 145 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA397079749 rs1204280989 |
146 | S>N | No |
ClinGen gnomAD |
|
|
rs1597379365 CA397079705 |
147 | D>A | No |
ClinGen Ensembl |
|
|
rs138878057 CA8228908 |
148 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs755746208 CA8228907 |
149 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs150275437 CA8228906 |
150 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1597379350 CA397079479 |
151 | V>G | No |
ClinGen Ensembl |
|
|
rs1366234445 CA397079477 |
152 | A>S | No |
ClinGen TOPMed |
|
|
rs781035410 CA286365049 |
153 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228905 rs781035410 |
153 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200513715 CA397079426 |
153 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200513715 CA397079418 |
153 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200513715 CA8228904 |
153 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397079409 rs141463390 |
154 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8228900 rs758290735 |
154 | R>P | No |
ClinGen ExAC TOPMed |
|
|
CA8228901 rs758290735 |
154 | R>Q | No |
ClinGen ExAC TOPMed |
|
|
rs141463390 CA8228903 |
154 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs752643625 CA8228899 |
155 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759678775 CA8228894 CA397079357 |
156 | S>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765285056 CA397079361 |
156 | S>A | No |
ClinGen ExAC gnomAD |
|
|
CA8228895 rs765285056 |
156 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1597379297 CA397079282 |
158 | S>G | No |
ClinGen Ensembl |
|
|
rs377692353 CA397079250 |
158 | S>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8228890 rs773583136 |
159 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397079219 rs1567615264 |
159 | A>V | No |
ClinGen Ensembl |
|
|
rs1196489891 CA397079188 |
160 | C>F | No |
ClinGen gnomAD |
|
|
rs146629473 CA8228888 |
161 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8228886 rs769401934 |
162 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA8228885 rs745423828 |
164 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs780590286 CA8228884 |
165 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA8228881 rs369480516 |
166 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs756895566 CA8228883 |
166 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs369480516 CA8228882 |
166 | G>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397078937 rs1597379242 |
167 | F>V | No |
ClinGen Ensembl |
|
| TCGA novel | 171 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs752625315 CA8228879 |
172 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs372043528 CA8228878 |
173 | G>E | No |
ClinGen ESP ExAC gnomAD |
|
|
CA8228877 rs755027753 |
174 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA8228876 rs567533965 |
175 | Q>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1406314887 CA397078552 |
176 | A>T | No |
ClinGen gnomAD |
|
|
CA397078508 rs767921379 |
177 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228873 rs750620841 |
177 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA8228874 rs760881892 |
177 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397078520 rs760881892 |
177 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228871 rs762310987 |
178 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228870 rs774981924 |
180 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA8228869 rs769238255 |
182 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA397078346 rs142098957 |
183 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8228867 rs142098957 |
183 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs148668035 CA397078273 |
184 | R>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs752905131 CA397078257 |
184 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
rs752905131 CA397078262 |
184 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
rs752905131 CA286364966 |
184 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs148668035 CA8228865 |
184 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs777354695 CA8228864 |
185 | Q>* | No |
ClinGen ExAC TOPMed |
|
|
rs771823020 CA8228863 |
186 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs369371155 CA8228860 |
187 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs569320748 CA8228858 |
189 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1319392233 CA397077960 |
190 | S>L | No |
ClinGen gnomAD |
|
|
rs951037208 CA286364925 |
190 | S>T | No |
ClinGen Ensembl |
|
|
rs1386943872 CA397077908 |
192 | W>* | No |
ClinGen gnomAD |
|
|
CA397077915 rs1480336072 |
192 | W>* | No |
ClinGen TOPMed |
|
|
CA8228857 rs780120979 |
192 | W>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228856 rs375844540 |
194 | E>D | No |
ClinGen ESP ExAC gnomAD |
|
|
COSM1709502 rs750630125 CA8228855 |
196 | R>C | skin [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA8228854 rs371444942 |
196 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs371444942 CA8228853 |
196 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs763497822 CA397076010 |
197 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763497822 CA8228850 |
197 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1448940967 CA397075977 |
198 | L>F | No |
ClinGen gnomAD |
|
|
rs770468839 CA8228848 |
199 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs760142026 CA8228847 |
200 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772898556 CA8228846 |
201 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA397075632 rs1200720522 |
202 | V>A | No |
ClinGen TOPMed |
|
|
CA8228816 rs112697935 |
204 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs781364427 CA8228815 |
204 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA286364579 rs867157914 |
205 | E>* | No |
ClinGen Ensembl |
|
|
rs757471715 CA397075558 |
206 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397075551 rs1336491945 |
207 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA397075530 COSM3712186 rs1333589726 |
208 | L>M | upper_aerodigestive_tract [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs1333589726 CA397075528 |
208 | L>V | No |
ClinGen gnomAD |
|
|
CA397075506 rs1468473376 |
209 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA8228811 rs374121329 |
210 | G>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs374121329 CA8228812 |
210 | G>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8228810 rs758766190 |
211 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752955295 CA8228809 |
212 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs542107288 CA286364564 |
213 | V>M | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA397075394 rs1470792968 |
214 | G>A | No |
ClinGen gnomAD |
|
|
rs765664689 CA8228807 |
215 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA286364559 rs923061754 |
216 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA8228806 rs370299302 |
216 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8228805 rs574614800 |
217 | A>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA397075323 rs1245337249 |
217 | A>T | No |
ClinGen TOPMed |
|
|
rs1316056033 CA397075283 |
218 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
CA397075280 rs1316056033 |
218 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1225460246 CA397075245 |
220 | E>K | No |
ClinGen gnomAD |
|
|
rs1225460246 CA397075242 |
220 | E>Q | No |
ClinGen gnomAD |
|
|
rs761377322 CA8228803 |
221 | T>A | No |
ClinGen ExAC |
|
|
CA397075206 rs1354101359 |
221 | T>I | No |
ClinGen TOPMed |
|
|
rs374443480 CA8228802 |
222 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397075143 rs1446089611 |
223 | P>S | No |
ClinGen TOPMed |
|
|
CA397075118 rs1434848150 |
224 | L>P | No |
ClinGen gnomAD |
|
|
CA397075125 rs1337566895 |
224 | L>V | No |
ClinGen gnomAD |
|
|
CA286364543 rs971840352 |
225 | L>R | No |
ClinGen TOPMed |
|
|
CA8228801 rs763691040 |
225 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA8228799 rs769646021 |
226 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs373594765 CA8228796 |
226 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373594765 CA397075071 |
226 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373594765 CA8228797 |
226 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs769646021 CA8228798 |
226 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770939767 CA397074777 |
228 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1269453701 CA397074765 |
229 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1269453701 CA397074776 |
229 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs139812589 CA8228775 |
230 | E>* | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8228774 rs139812589 |
230 | E>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs371091142 CA8228773 |
231 | S>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 231 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8228771 rs749607828 |
232 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs868163421 CA286364347 |
234 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA397074659 rs1276050250 |
235 | A>T | No |
ClinGen TOPMed |
|
|
CA8228770 rs780429715 |
235 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs750941569 COSM974730 CA8228768 |
236 | R>C | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8228767 COSM1609769 rs377645347 |
236 | R>H | liver [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA397074588 rs377645347 |
236 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1465856301 CA397074557 |
237 | M>L | No |
ClinGen gnomAD |
|
|
rs757996532 CA8228766 |
237 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397074561 rs1465856301 |
237 | M>V | No |
ClinGen gnomAD |
|
|
CA8228765 rs60803836 |
238 | A>V | Variant assessed as Somatic; 6.376e-05 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs1180925822 CA397074389 |
240 | M>T | No |
ClinGen gnomAD |
|
|
CA397074378 rs1417233558 |
241 | A>P | No |
ClinGen gnomAD |
|
|
rs200296577 CA8228763 |
242 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397074320 COSM1172371 rs1177828138 |
242 | R>H | Variant assessed as Somatic; 0.0 impact. oesophagus [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA397074265 rs1461053752 |
244 | I>V | No |
ClinGen gnomAD |
|
|
rs766276924 CA8228761 |
245 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs780694192 COSM1380425 CA8228762 |
245 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA286364302 rs541624153 |
246 | E>Q | No |
ClinGen 1000Genomes |
|
|
rs529881444 CA8228759 |
247 | R>* | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs143846527 CA8228758 |
247 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA286364290 rs375497943 |
248 | D>N | No |
ClinGen gnomAD |
|
|
CA397074092 rs375497943 |
248 | D>Y | No |
ClinGen gnomAD |
|
|
rs1308581314 CA397074054 |
249 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1381627019 CA397073984 |
250 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
COSM1215983 rs768885691 CA8228755 |
251 | S>N | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA397073963 rs1567614348 |
251 | S>R | No |
ClinGen Ensembl |
|
|
rs749517862 CA397073913 |
252 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228753 rs202128233 |
253 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs916266151 CA286364279 |
253 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA397073856 rs1159358652 |
254 | Q>H | No |
ClinGen gnomAD |
|
|
rs770206347 CA8228752 |
255 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs746373755 CA8228751 |
257 | M>K | No |
ClinGen ExAC gnomAD |
|
|
CA286364273 rs1046628363 |
260 | S>G | No |
ClinGen TOPMed gnomAD |
|
|
CA8228750 rs781744174 |
261 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397073638 rs781744174 |
261 | N>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397073603 rs895501668 |
262 | Q>* | No |
ClinGen gnomAD |
|
|
rs895501668 CA286364268 |
262 | Q>E | No |
ClinGen gnomAD |
|
|
rs747642589 CA8228748 |
264 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA397073487 rs1240249205 |
265 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs754606678 CA8228746 |
265 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA8228744 rs766262660 |
266 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs767538183 CA8228741 |
270 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA8228739 rs774423739 |
271 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764173847 CA8228738 |
272 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1423908127 CA397073212 |
272 | P>S | No |
ClinGen gnomAD |
|
|
CA286364244 rs1043304795 |
275 | S>F | No |
ClinGen gnomAD |
|
|
CA397073070 rs1043304795 |
275 | S>Y | No |
ClinGen gnomAD |
|
|
rs770116489 CA8228735 |
276 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA397072971 rs1191531304 |
277 | L>V | No |
ClinGen gnomAD |
|
|
rs34519538 CA8228733 VAR_051605 |
278 | N>H | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs375976649 CA286364229 |
278 | N>S | No |
ClinGen ESP gnomAD |
|
|
CA397072849 rs1289018849 |
280 | I>V | No |
ClinGen gnomAD |
|
|
rs1567614223 CA397072820 |
281 | S>Y | No |
ClinGen Ensembl |
|
|
CA397072743 rs1211057931 |
283 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1356648933 CA397072740 |
283 | R>H | No |
ClinGen gnomAD |
|
|
CA8228732 rs771425645 |
284 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA286364226 CA397072629 rs987425504 |
286 | H>Q | No |
ClinGen gnomAD |
|
|
CA397072579 rs1328038675 |
288 | V>A | No |
ClinGen gnomAD |
|
|
rs778424719 CA8228730 |
289 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754592423 CA8228729 |
290 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228728 rs748943997 |
290 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA286364224 rs748943997 |
290 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228727 rs779892109 |
291 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs1476505800 CA397072386 |
293 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA8228724 rs767222099 |
293 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1476505800 CA397072380 |
293 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA397072319 rs1199121995 |
294 | H>Q | No |
ClinGen gnomAD |
|
|
CA397072352 rs1424873325 |
294 | H>Y | No |
ClinGen gnomAD |
|
|
rs150857520 CA8228722 |
296 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA286364217 rs769879834 |
297 | D>G | No |
ClinGen gnomAD |
|
|
rs1271662273 CA397072142 |
298 | T>I | No |
ClinGen gnomAD |
|
|
rs1271662273 CA397072144 |
298 | T>S | No |
ClinGen gnomAD |
|
|
CA8228721 rs764159467 |
299 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs369535053 CA8228720 |
299 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1597377696 CA397071888 |
300 | V>G | No |
ClinGen Ensembl |
|
|
CA8228696 rs754060502 |
301 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA8228694 rs760984054 |
304 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA8228690 rs141450781 |
306 | A>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8228692 rs772656834 |
306 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs141450781 CA8228691 |
306 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs554003292 CA8228688 |
307 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8228687 rs780751762 |
309 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA8228686 rs770741071 |
310 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200147810 CA8228684 |
311 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1320789692 CA397071591 |
312 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA8228683 rs148321136 |
315 | L>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397071528 rs1360684763 |
315 | L>V | No |
ClinGen gnomAD |
|
|
CA8228681 rs778946876 |
316 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs1221867750 CA397071507 |
316 | D>Y | No |
ClinGen Ensembl |
|
|
rs754059621 CA8228679 |
317 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA397071435 rs1234476105 |
318 | T>S | No |
ClinGen gnomAD |
|
|
rs1488556161 CA397071399 |
320 | A>V | No |
ClinGen gnomAD |
|
|
CA397071378 rs1340262513 |
321 | E>D | No |
ClinGen gnomAD |
|
|
rs76703327 CA286363857 |
325 | A>G | No |
ClinGen gnomAD |
|
|
CA397071293 rs1220283512 |
325 | A>S | No |
ClinGen gnomAD |
|
|
rs368231679 CA8228677 |
326 | V>L | No |
ClinGen ESP ExAC gnomAD |
|
|
CA8228675 rs574976155 |
328 | H>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8228676 rs760972093 |
328 | H>R | No |
ClinGen ExAC gnomAD |
|
|
CA286363841 rs370676684 |
329 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397071158 rs188551104 |
329 | G>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs188551104 CA8228673 |
329 | G>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs370676684 CA8228672 |
329 | G>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759021364 CA8228670 |
330 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs1351268294 CA397071123 |
330 | F>V | No |
ClinGen gnomAD |
|
|
CA8228667 rs374779531 |
334 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs377299465 CA286363825 |
334 | S>P | No |
ClinGen Ensembl |
|
|
rs748070228 CA8228664 |
335 | N>K | No |
ClinGen ExAC |
|
|
CA397070933 rs1268043561 |
337 | D>G | No |
ClinGen TOPMed gnomAD |
|
|
rs377428809 CA8228663 |
337 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397070926 rs1268043561 |
337 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
CA8228662 rs755063696 |
338 | T>M | No |
ClinGen ExAC gnomAD |
|
|
CA397070885 rs755063696 |
338 | T>R | No |
ClinGen ExAC gnomAD |
|
|
rs751834820 CA8228636 |
340 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA397069488 rs1374201080 |
341 | K>N | No |
ClinGen gnomAD |
|
|
rs1327401553 CA397069480 |
342 | G>E | No |
ClinGen gnomAD |
|
|
CA397069463 rs1332893126 |
344 | Q>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8228635 rs764526553 |
344 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs1597376621 CA397069448 |
345 | V>G | No |
ClinGen Ensembl |
|
|
CA397069455 rs1334401898 |
345 | V>M | No |
ClinGen TOPMed |
|
|
CA397069436 rs1334722784 |
346 | R>S | No |
ClinGen TOPMed |
|
|
CA8228634 rs138484696 |
347 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 347 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1378085821 CA397069398 |
349 | P>L | No |
ClinGen gnomAD |
|
|
rs750054928 CA8228630 |
350 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1382231483 CA397069351 |
354 | L>P | No |
ClinGen gnomAD |
|
|
CA8228629 rs145850660 |
354 | L>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA397069346 rs1201311812 |
355 | Q>* | No |
ClinGen TOPMed |
|
|
CA8228627 rs200190764 |
355 | Q>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200190764 CA8228628 |
355 | Q>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8228626 rs762796554 |
356 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228625 rs762796554 |
356 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1465904249 CA397069334 |
356 | A>V | No |
ClinGen gnomAD |
|
|
rs151006109 CA8228624 COSM974729 |
357 | A>V | endometrium [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA8228622 rs145441544 |
359 | A>P | No |
ClinGen ESP ExAC gnomAD |
|
|
rs145441544 CA397069315 |
359 | A>T | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1260579747 CA397069307 |
359 | A>V | No |
ClinGen gnomAD |
|
|
CA8228621 rs772828781 |
360 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA397069283 rs1350948090 |
361 | E>G | No |
ClinGen gnomAD |
|
|
CA397069274 rs747271217 |
362 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201844867 CA8228616 |
362 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201844867 CA8228618 |
362 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228617 rs201844867 |
362 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228619 rs747271217 |
362 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228614 rs755497640 |
363 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA8228611 rs761395784 |
365 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA397069241 rs113497258 |
365 | G>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA397069237 rs761395784 |
365 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA8228612 rs113497258 |
365 | G>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs148833471 CA397069204 |
368 | K>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1444255955 CA397069185 |
370 | I>V | No |
ClinGen gnomAD |
|
|
CA397069168 rs546761521 |
371 | I>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs546761521 CA8228608 |
371 | I>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 374 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA397069043 rs1333960630 |
375 | V>E | No |
ClinGen TOPMed |
|
|
CA397069031 rs1424990609 |
377 | P>S | No |
ClinGen gnomAD |
|
|
rs1477307461 CA397069026 |
378 | G>R | No |
ClinGen gnomAD |
|
|
CA397069016 rs1200311854 |
379 | P>H | No |
ClinGen gnomAD |
|
|
CA397069010 rs1200311854 |
379 | P>L | No |
ClinGen gnomAD |
|
|
rs145267803 CA286360005 |
379 | P>S | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs1597375911 CA397069005 |
380 | Q>* | No |
ClinGen Ensembl |
|
| TCGA novel | 380 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8228581 rs189127618 |
383 | D>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1333160605 CA397068936 |
384 | D>E | No |
ClinGen TOPMed |
|
|
CA286359989 rs534734438 |
385 | P>L | No |
ClinGen 1000Genomes gnomAD |
|
|
CA397068920 rs534734438 |
385 | P>R | No |
ClinGen 1000Genomes gnomAD |
|
|
CA8228580 rs760855545 |
385 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs774639483 CA397068888 |
386 | C>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs367729578 CA8228577 |
386 | C>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA397068879 rs769065449 |
387 | A>S | No |
ClinGen ExAC gnomAD |
|
|
COSM974728 rs769065449 CA8228575 |
387 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs749765187 CA8228574 |
387 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA397068858 rs1329492615 |
388 | H>L | No |
ClinGen gnomAD |
|
|
CA286359951 rs868381895 |
388 | H>N | No |
ClinGen TOPMed gnomAD |
|
|
CA397068861 rs1329492615 |
388 | H>R | No |
ClinGen gnomAD |
|
|
CA397068865 rs868381895 |
388 | H>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA397068847 rs1401531468 |
389 | L>F | No |
ClinGen gnomAD |
|
|
CA397068814 rs1173821299 |
391 | G>A | No |
ClinGen gnomAD |
|
|
CA397068820 rs1427820398 |
391 | G>S | No |
ClinGen gnomAD |
|
|
rs1379135951 CA397068792 |
392 | P>L | No |
ClinGen gnomAD |
|
|
CA286359925 rs891874822 |
393 | D>N | No |
ClinGen gnomAD |
|
|
CA8228570 rs374698190 |
394 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 394 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1440665834 CA397068750 |
395 | L>P | No |
ClinGen gnomAD |
|
|
rs774799205 CA8228569 |
396 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8228568 rs774799205 |
396 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1380422 CA286359905 rs942046989 |
396 | P>S | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA8228566 rs184535367 |
398 | P>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs753800184 CA286359881 |
399 | A>D | No |
ClinGen ExAC gnomAD |
|
|
rs753800184 CA8228565 |
399 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1307135770 CA397068696 |
399 | A>T | No |
ClinGen gnomAD |
1 associated diseases with P53602
[MIM: 614714]: Porokeratosis 7, multiple types (POROK7)
A form of porokeratosis, a disorder of faulty keratinization characterized by one or more atrophic patches surrounded by a distinctive hyperkeratotic ridgelike border called the cornoid lamella. The keratotic lesions can progress to overt cutaneous neoplasms, typically squamous cell carcinomas. Multiple clinical variants of porokeratosis are recognized, including porokeratosis of Mibelli, linear porokeratosis, disseminated superficial actinic porokeratosis, palmoplantar porokeratosis, and punctate porokeratosis. Different clinical presentations can be observed among members of the same family. Individuals expressing more than one variant have also been reported. {ECO:0000269|PubMed:18823933, ECO:0000269|PubMed:26202976}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A form of porokeratosis, a disorder of faulty keratinization characterized by one or more atrophic patches surrounded by a distinctive hyperkeratotic ridgelike border called the cornoid lamella. The keratotic lesions can progress to overt cutaneous neoplasms, typically squamous cell carcinomas. Multiple clinical variants of porokeratosis are recognized, including porokeratosis of Mibelli, linear porokeratosis, disseminated superficial actinic porokeratosis, palmoplantar porokeratosis, and punctate porokeratosis. Different clinical presentations can be observed among members of the same family. Individuals expressing more than one variant have also been reported. {ECO:0000269|PubMed:18823933, ECO:0000269|PubMed:26202976}. Note=The disease is caused by variants affecting the gene represented in this entry.
Functions
| Description | ||
|---|---|---|
| EC Number | 4.1.1.33 | Carboxy-lyases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| diphosphomevalonate decarboxylase activity | Catalysis of the reaction: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + H(+) + isopentenyl diphosphate + phosphate. |
| Hsp70 protein binding | Binding to a Hsp70 protein, heat shock proteins around 70kDa in size. |
| protein homodimerization activity | Binding to an identical protein to form a homodimer. |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| cholesterol biosynthetic process | The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. |
| isopentenyl diphosphate biosynthetic process, mevalonate pathway | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. |
| isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
| positive regulation of cell population proliferation | Any process that activates or increases the rate or extent of cell proliferation. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MASEKPLAAV | TCTAPVNIAV | IKYWGKRDEE | LVLPINSSLS | VTLHQDQLKT | TTTAVISKDF |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TEDRIWLNGR | EEDVGQPRLQ | ACLREIRCLA | RKRRNSRDGD | PLPSSLSCKV | HVASVNNFPT |
| 130 | 140 | 150 | 160 | 170 | 180 |
| AAGLASSAAG | YACLAYTLAR | VYGVESDLSE | VARRGSGSAC | RSLYGGFVEW | QMGEQADGKD |
| 190 | 200 | 210 | 220 | 230 | 240 |
| SIARQVAPES | HWPELRVLIL | VVSAEKKLTG | STVGMRASVE | TSPLLRFRAE | SVVPARMAEM |
| 250 | 260 | 270 | 280 | 290 | 300 |
| ARCIRERDFP | SFAQLTMKDS | NQFHATCLDT | FPPISYLNAI | SWRIIHLVHR | FNAHHGDTKV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| AYTFDAGPNA | VIFTLDDTVA | EFVAAVWHGF | PPGSNGDTFL | KGLQVRPAPL | SAELQAALAM |
| 370 | 380 | 390 | |||
| EPTPGGVKYI | IVTQVGPGPQ | ILDDPCAHLL | GPDGLPKPAA |