P28561

PR
Gene name
apcE
Protein name
Phycobiliprotein ApcE
Names
Anchor polypeptide, PBS-anchor protein, Phycobilisome linker polypeptide
Species
Aglaothamnion neglectum (Red alga)
KEGG Pathway
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

642-736 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for P28561

Entry ID Method Resolution Chain Position Source
AF-P28561-F1 Predicted AlphaFoldDB

No variants for P28561

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for P28561

No associated diseases with P28561

3 regional properties for P28561

Type Name Position InterPro Accession
domain Phycobilisome linker domain 242 - 422 IPR001297-1
domain Phycobilisome linker domain 498 - 680 IPR001297-2
domain Phycobilisome linker domain 694 - 871 IPR001297-3

Functions

Description
EC Number
Subcellular Localization
  • Plastid, chloroplast thylakoid membrane ; Peripheral membrane protein ; Stromal side
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast thylakoid membrane The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
phycobilisome Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.

1 GO annotations of molecular function

Name Definition
lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

1 GO annotations of biological process

Name Definition
photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MIVNASSESP RVQPQLYRTA SISTIVQAEQ QDRFLQLGEL NDLVTFLNSG TKRLEIAEVL
70 80 90 100 110 120
SKNADILVAK AADKIFVGGS AISYLERPQA SFVEFDNISM TQKEMSGNVQ VNLLSNTSSN
130 140 150 160 170 180
VISNDTLPPG FKPINVVRYG STRMKKSLRD LDWFLRYLTY AIIAGDPNIL SVNIRGLKDL
190 200 210 220 230 240
ISNACSSAAA TVALREMRKS AISIFDNDLS AQEIVQQYFN ILITEFDSPS LTDKIRRRTS
250 260 270 280 290 300
TDVQGLRLPQ IYSKSGIPLQ RFVMKTSLSN EEKSSVLKAC YRQVFERDIA KAYNLSFVDL
310 320 330 340 350 360
ESQVKNGSLS IKEFIRRIGK SSVYRKQFYE PFVNSRVVEL AFKHFLGRGL SSLEEFQKYF
370 380 390 400 410 420
SILSLRGLNG LIDALINSLE YADYFAEETC PYLRGLSEEP LESRNWGVQF SLLNYSAPFR
430 440 450 460 470 480
KVPQFITLFS DYKMSLPDQH PYGLGNDHLA LQFGAIFPNS LTALSNKSAF FGRYTRRILL
490 500 510 520 530 540
RQGPGIYSQI SNPQARSKSI GSLGPKIFKL NSIDNTYFSD EVMSLPPDIE QIIKAIYLRV
550 560 570 580 590 600
FGRFIYLEEL SSVRKFESLF RSSKISVRDF IRNLVKSSVF RSLYWEPLYI CKAIEYIHYR
610 620 630 640 650 660
LLGRPSYGRQ EINQYFDIVY REGYYKMIDY LLNSSEYIRS FGDNTVPYER YITSANMILK
670 680 690 700 710 720
SNYSNFLYST LKTKNSNSKK FIELSNILEK RSLNSIQARI SQGVSTVRDQ YKVFQLTQLS
730 740 750 760 770 780
SQVDKRQVVK AIYRQIFERD LNSFAIGDEF INLEKALVNN NITVQQFIEQ IGSSSLYGRE
790 800 810 820 830 840
FYQPYPNTKV IELGTKHFLG RAPNNQAEIR YYNQILASQG LSSFITVLVN SNEYNQVFGV
850 860 870 880
NIVPYRRFTT LPAANFPNTE KLYNTLTKQS SEIIVPSFIV VPGNQ