P27489

PR
Gene name
CAB13 (LHBC1)
Protein name
Chlorophyll a-b binding protein 13, chloroplastic
Names
ADABP, Adenosine deaminase complexing protein 2, ADCP-2, Dipeptidyl peptidase IV, DPP IV, T-cell activation antigen CD26, TP103, LHCII type III CAB-13
Species
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
KEGG Pathway
sly:101243766
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1-53 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for P27489

Entry ID Method Resolution Chain Position Source
AF-P27489-F1 Predicted AlphaFoldDB

7 variants for P27489

Variant ID(s) Position Change Description Diseaes Association Provenance
vcZ1ZOHBU 13 V>I No Ensembl
vcZ1ZOHBY 26 A>S No Ensembl
vcZ1ZOHC0 34 A>V No Ensembl
vcZ1ZOHC2 35 M>I No Ensembl
vcZ1ZOHC1 35 M>V No Ensembl
vcZ1ZOHD2 65 S>P No Ensembl
vcZ1ZOHER 229 V>I No Ensembl

No associated diseases with P27489

No regional properties for P27489

Type Name Position InterPro Accession
No domain, repeats, and functional sites for P27489

Functions

Description
EC Number
Subcellular Localization
  • Plastid, chloroplast thylakoid membrane; Multi-pass membrane protein
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

4 GO annotations of cellular component

Name Definition
chloroplast thylakoid membrane The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.

2 GO annotations of molecular function

Name Definition
chlorophyll binding Binding to a chlorophyll; a compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
metal ion binding Binding to a metal ion.

2 GO annotations of biological process

Name Definition
photosynthesis, light harvesting in photosystem I After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center.
response to light stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.

2 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
P07369 CAB3C Chlorophyll a-b binding protein 3C, chloroplastic Solanum lycopersicum (Tomato) (Lycopersicon esculentum) PR
P07370 CAB1B Chlorophyll a-b binding protein 1B, chloroplastic Solanum lycopersicum (Tomato) (Lycopersicon esculentum) PR
10 20 30 40 50 60
MASMAATASS TTVVKATPFL GQTKNANPLR DVVAMGSARF TMSNDLWYGP DRVKYLGPFS
70 80 90 100 110 120
AQTPSYLNGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG RWAMLGALGC IFPEVLEKWV
130 140 150 160 170 180
KVDFKEPVWF KAGSQIFSDG GLDYLGNPNL VHAQSILAVL GFQVVLMGLV EGFRINGLPG
190 200 210 220 230 240
VGEGNDLYPG GQYFDPLGLA DDPTTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE
250 260
NLLDHLDNPV ANNAWVYATK FVPGA