P23580

PR
Gene name
rpoC1
Protein name
DNA-directed RNA polymerase subunit beta'
Names
PEP, Plastid-encoded RNA polymerase subunit beta', RNA polymerase subunit beta'
Species
Euglena gracilis
KEGG Pathway
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

271-353 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for P23580

Entry ID Method Resolution Chain Position Source
AF-P23580-F1 Predicted AlphaFoldDB

No variants for P23580

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for P23580

No associated diseases with P23580

5 regional properties for P23580

Type Name Position InterPro Accession
domain RNA polymerase, alpha subunit 332 - 379 IPR000722-1
domain RNA polymerase, alpha subunit 391 - 472 IPR000722-2
domain RNA polymerase, N-terminal 223 - 502 IPR006592
domain RNA polymerase Rpb1, domain 3 477 - 580 IPR007066
domain RNA polymerase Rpb1, domain 1 5 - 330 IPR007080

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, chloroplast
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.

3 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
metal ion binding Binding to a metal ion.

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MKDYVRIKIA SPQQVLSWTE RSLPDGRLIG RLTNFDMLHF ETKKPVFGGL LCERIFGSTK
70 80 90 100 110 120
TNQCFCGKYK KMFQKGYANN FVLVCANCFV EINNCNRRRF RMGYIDLVFP LIHTWYLKSR
130 140 150 160 170 180
PCYLAIMLGK KVKNIKKMCF MDSYIKIRNN DGQTVGILTG AEAIYSRLSK IDLESLIEFL
190 200 210 220 230 240
YKRLVGIEKL KEYNFEKYLW LRKKFINRIK LVNAFIQTNT KPIWIMIHFL PVLPPDIRPV
250 260 270 280 290 300
VKLQDGTVIM TDLNFLYIDI IYGNNKIIKL RKFLLPEEFM LNEKRSLQVK VDAFINNENI
310 320 330 340 350 360
SENPYEQNDK KLKSITEGLK GKKGRFRENL LGKTVDYSGR SVIVVEPKLL LHECGMPLDI
370 380 390 400 410 420
ALELFHPILI KMLIRFKFSV GIREAKRHIY NASNFVIPVL EKVLNSYFIL LNRAPTLHRL
430 440 450 460 470 480
GIQSFQPKVT FEKAILLHPL VCSAFNADFD GDQMGIHIPL SLKSLAEARS MLISINNCVL
490 500 510 520 530 540
PANGLPSILP SQDMVLGCYY VTLENCNLDF ILTNLKIYAN IEKVKSAYHK GEILIQTFVW
550 560 570 580
LICQKFPNIL KNSKIRIKKK RMVKKLVFFR TTIGRIFFDD MIKEFL