O98462

PR
Gene name
rpoA
Protein name
DNA-directed RNA polymerase subunit alpha
Names
PEP, Plastid-encoded RNA polymerase subunit alpha, RNA polymerase subunit alpha
Species
Spirogyra maxima (Green alga)
KEGG Pathway
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

207-297 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for O98462

Entry ID Method Resolution Chain Position Source
AF-O98462-F1 Predicted AlphaFoldDB

No variants for O98462

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for O98462

No associated diseases with O98462

8 regional properties for O98462

Type Name Position InterPro Accession
domain DNA-directed RNA polymerase, subunit 2, hybrid-binding domain 679 - 1065 IPR007120
conserved_site RNA polymerase, beta subunit, conserved site 918 - 930 IPR007121
domain RNA polymerase Rpb2, domain 7 1067 - 1141 IPR007641
domain RNA polymerase Rpb2, domain 2 140 - 292 IPR007642-1
domain RNA polymerase Rpb2, domain 2 368 - 414 IPR007642-2
domain RNA polymerase, beta subunit, protrusion 28 - 460 IPR007644
domain RNA polymerase Rpb2, domain 3 473 - 538 IPR007645
domain DNA-directed RNA polymerase, beta subunit, external 1 domain 551 - 618 IPR019462

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, chloroplast
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.

3 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MGQYTINLRE SYPVWKIGSK IDSTKEECLD YMLFIASPLL AGQATTLGVA IRRTLLESIQ
70 80 90 100 110 120
GTAIVAAKIY GAAHEYSTLE GIQESIHDIL LNLKQVIIKN KICEFQKCLI SIIGPKKVTA
130 140 150 160 170 180
ADIELSQNIT ISNPYHHIAT ITKPIRFQVE LIINKGRGYL IQDGNDVQDG YFPVDALFNP
190 200 210 220 230 240
VRNVNFSIHN LAEQQEALIL EIWTNGAITP LDALRQGSEN LIHLFLPPFG LEDDTYMTSL
250 260 270 280 290 300
GSQDYNIHIK NSLKEKFELH SIERIEDSHL IKDQFLEYSK TPIELLELST RPFKCLKNAN
310 320 330 340
IYTINDLLKL SQQDLLKISN MGPSSVKQIV EALDKRFGIN LKLK