O81242
Gene name |
RHL1 (HYP7, At1g48380, F11A17.7) |
Protein name |
DNA-binding protein RHL1 |
Names |
Protein ELONGATED HYPOCOTYL 7, Protein ROOT HAIRLESS 1 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G48380 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for O81242
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-O81242-F1 | Predicted | AlphaFoldDB |
46 variants for O81242
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH04904352 | 2 | V>E | No | 1000Genomes | |
| ENSVATH04904351 | 3 | R>Q | No | 1000Genomes | |
| tmp_1_17879181_T_C | 8 | K>R | No | 1000Genomes | |
| ENSVATH01321020 | 12 | S>T | No | 1000Genomes | |
| ENSVATH00087292 | 18 | D>E | No | 1000Genomes | |
| ENSVATH04904350 | 26 | K>R | No | 1000Genomes | |
| tmp_1_17879118_T_G | 29 | K>T | No | 1000Genomes | |
| ENSVATH13441773 | 30 | T>S | No | 1000Genomes | |
| tmp_1_17879076_G_T | 43 | A>E | No | 1000Genomes | |
| ENSVATH13441771 | 46 | H>Y | No | 1000Genomes | |
| tmp_1_17879062_A_G | 48 | S>P | No | 1000Genomes | |
| tmp_1_17878978_A_T | 76 | S>T | No | 1000Genomes | |
| ENSVATH00087290 | 84 | I>V | No | 1000Genomes | |
| ENSVATH00087289 | 89 | I>V | No | 1000Genomes | |
| ENSVATH00087285 | 111 | M>I | No | 1000Genomes | |
| tmp_1_17878760_G_T | 120 | P>Q | No | 1000Genomes | |
| tmp_1_17878751_C_A | 123 | R>I | No | 1000Genomes | |
| ENSVATH04904347 | 144 | N>Y | No | 1000Genomes | |
| ENSVATH00087281 | 187 | G>E | No | 1000Genomes | |
| ENSVATH00087280 | 190 | A>V | No | 1000Genomes | |
| ENSVATH04904343 | 194 | K>T | No | 1000Genomes | |
| ENSVATH04904342 | 195 | L>M | No | 1000Genomes | |
| ENSVATH01320996 | 197 | S>T | No | 1000Genomes | |
| ENSVATH00087279 | 200 | I>T | No | 1000Genomes | |
| ENSVATH14260857 | 207 | T>S | No | 1000Genomes | |
| tmp_1_17878303_A_G | 212 | V>A | No | 1000Genomes | |
| ENSVATH01320995 | 214 | N>I | No | 1000Genomes | |
| ENSVATH00087278 | 214 | N>K | No | 1000Genomes | |
| tmp_1_17878289_C_T | 217 | V>I | No | 1000Genomes | |
| tmp_1_17878235_C_A | 235 | V>F | No | 1000Genomes | |
| ENSVATH04904340 | 241 | V>L | No | 1000Genomes | |
| ENSVATH01320984 | 264 | S>P | No | 1000Genomes | |
| tmp_1_17877903_A_C | 268 | S>A | No | 1000Genomes | |
| ENSVATH00087273 | 292 | S>G | No | 1000Genomes | |
| ENSVATH00087272 | 302 | I>V | No | 1000Genomes | |
| ENSVATH01320982 | 311 | E>A | No | 1000Genomes | |
| ENSVATH01320983 | 311 | E>K | No | 1000Genomes | |
| tmp_1_17877767_A_C | 313 | L>R | No | 1000Genomes | |
| ENSVATH01320981 | 314 | P>L | No | 1000Genomes | |
| tmp_1_17877765_G_A | 314 | P>S | No | 1000Genomes | |
| tmp_1_17877756_T_C | 317 | R>G | No | 1000Genomes | |
| ENSVATH01320980 | 317 | R>K | No | 1000Genomes | |
| ENSVATH01320979 | 320 | L>P | No | 1000Genomes | |
| ENSVATH04904334 | 323 | K>E | No | 1000Genomes | |
| ENSVATH14260856 | 327 | L>V | No | 1000Genomes | |
| ENSVATH04904333 | 350 | K>I | No | 1000Genomes |
No associated diseases with O81242
1 regional properties for O81242
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Calcipressin-2, RNA recognition motif | 11 - 87 | IPR034919 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| DNA endoreduplication | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. |
| root hair initiation | The process in which a protrusion or bulge is formed at the site of plant root hair outgrowth. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MVRASSSKKG | GSKGGDKDDA | ESKQRKRLKT | LALDNQLLSD | SPAKSHSSLK | PSKQVLKHHG |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TDIIRKSQRK | NRFLFSFPGL | LAPISAATIG | DLDRLSTKNP | VLYLNFPQGR | MKLFGTILYP |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KNRYLTLQFS | RGGKNVLCDD | YFDNMIVFSE | SWWIGTKEEN | PEEARLDFPK | ELAQAENTEF |
| 190 | 200 | 210 | 220 | 230 | 240 |
| DFQGGAGGAA | SVKKLASPEI | GSQPTETDSP | EVDNEDVLSE | DGEFLDDKIQ | VTPPVQLTPP |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VQVTPVRQSQ | RNSGKKFNFA | ETSSEASSGE | SEGNTSDEDE | KPLLEPESST | RSREESQDGN |
| 310 | 320 | 330 | 340 | 350 | |
| GITASASKLP | EELPAKREKL | KSKDSKLVQA | TLSNLFKKAE | EKTAGTSKAK | SSSKA |