F4JF21
Gene name |
PTAC10 |
Protein name |
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 |
Names |
pTAC10, Plastid-encoded RNA polymerase-associated protein 3, PEP-associated protein 3, Protein PIGMENT DEFECTIVE 312 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G48500 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for F4JF21
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-F4JF21-F1 | Predicted | AlphaFoldDB |
28 variants for F4JF21
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH06270872 | 31 | P>S | No | 1000Genomes | |
| tmp_3_17962308_A_G | 34 | I>V | No | 1000Genomes | |
| ENSVATH06270873 | 148 | P>S | No | 1000Genomes | |
| tmp_3_17962792_G_C | 195 | W>S | No | 1000Genomes | |
| tmp_3_17962821_G_A | 205 | V>I | No | 1000Genomes | |
| tmp_3_17962909_A_T | 234 | K>I | No | 1000Genomes | |
| tmp_3_17963304_C_T | 278 | T>I | No | 1000Genomes | |
| ENSVATH00408389 | 301 | P>A | No | 1000Genomes | |
| ENSVATH06270884 | 302 | I>V | No | 1000Genomes | |
| tmp_3_17963585_C_T | 325 | T>M | No | 1000Genomes | |
| ENSVATH00408391 | 331 | Y>H | No | 1000Genomes | |
| tmp_3_17963879_T_G | 354 | F>V | No | 1000Genomes | |
| ENSVATH06270889 | 400 | Y>F | No | 1000Genomes | |
| ENSVATH06270892 | 413 | M>I | No | 1000Genomes | |
| ENSVATH06270893 | 416 | G>S | No | 1000Genomes | |
| ENSVATH00408394 | 419 | E>G | No | 1000Genomes | |
| tmp_3_17964275_G_T | 420 | A>S | No | 1000Genomes | |
| tmp_3_17964338_G_A | 441 | E>K | No | 1000Genomes | |
| ENSVATH02470076 | 449 | E>Q | No | 1000Genomes | |
| tmp_3_17964499_C_T | 469 | L>F | No | 1000Genomes | |
| tmp_3_17964519_G_T | 475 | L>F | No | 1000Genomes | |
| ENSVATH06270909 | 485 | M>V | No | 1000Genomes | |
| tmp_3_17964864_C_G | 511 | F>L | No | 1000Genomes | |
| ENSVATH02470081 | 530 | S>F | No | 1000Genomes | |
| ENSVATH12638334 | 535 | G>D | No | 1000Genomes | |
| ENSVATH12638355 | 560 | A>V | No | 1000Genomes | |
| ENSVATH14401451 | 618 | L>F | No | 1000Genomes | |
| tmp_3_17965268_G_A | 623 | E>K | No | 1000Genomes |
No associated diseases with F4JF21
1 regional properties for F4JF21
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | S1 domain | 272 - 340 | IPR003029 |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
| chloroplast nucleoid | The region of a chloroplast to which the DNA is confined. |
| chloroplast stroma | The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis. |
| plastid-encoded plastid RNA polymerase complex | An RNA polymerase complex containing polypeptides encoded by the plastid genome. Plastid-encoded DNA-directed RNA polymerases resemble eubacterial multisubunit RNA polymerases, with a core composed of alpha, beta, and beta-prime subunits. Some forms contain multiple additional subunits. An additional sigma factor subunit is required for promoter recognition. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| RNA binding | Binding to an RNA molecule or a portion thereof. |
No GO annotations of biological process
| Name | Definition |
|---|---|
| No GO annotations for biological process |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MQICQTKLNF | TFPNPTNPNF | CKPKALQWSP | PRRISLLPCR | GFSSDEFPVD | ETFLEKFGPK |
| 70 | 80 | 90 | 100 | 110 | 120 |
| DKDTEDEARR | RNWIERGWAP | WEEILTPEAD | FARKSLNEGE | EVPLQSPEAI | EAFKMLRPSY |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RKKKIKEMGI | TEDEWYAKQF | EIRGDKPPPL | ETSWAGPMVL | RQIPPRDWPP | RGWEVDRKEL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| EFIREAHKLM | AERVWLEDLD | KDLRVGEDAT | VDKMCLERFK | VFLKQYKEWV | EDNKDRLEEE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| SYKLDQDFYP | GRRKRGKDYE | DGMYELPFYY | PGMVCEGTVT | TLHLYQGAFV | DIGGVHEGWV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| PIKGNDWFWI | RHFIKVGMHV | IVEITAKRDP | YRFRFPLELR | FVHPNIDHMI | FNKFDFPPIF |
| 370 | 380 | 390 | 400 | 410 | 420 |
| HRDGDTNPDE | IRRDCGRPPE | PRKDPGSKPE | EEGLLSDHPY | VDKLWQIHVA | EQMILGDYEA |
| 430 | 440 | 450 | 460 | 470 | 480 |
| NPAKYEGKKL | SELSDDEDFD | EQKDIEYGEA | YYKKTKLPKV | ILKTSVKELD | LEAALTERQH |
| 490 | 500 | 510 | 520 | 530 | 540 |
| HNKLMMEAKA | RGEGYKIDKL | RRNIEMDEYD | FLHWRRSLEE | REALLRDISS | RQALGLPLEE |
| 550 | 560 | 570 | 580 | 590 | 600 |
| PGRYKPGSFF | GKDQYDPTSA | LYQYDYWGEP | KNSEISKQER | MKDAHNKSIV | GKGNVWYDMS |
| 610 | 620 | 630 | 640 | 650 | 660 |
| YDDAIKQTIE | KRKEGSTLAS | QEEETESEEE | EEDDDDFDDF | DYSILSDESS | IGYSEQQPLV |
| NGTQVLTD |