F4IP06
Gene name |
SWC2 (At2g36740, F13K3.14) |
Protein name |
SWR1 complex subunit 2 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT2G36740 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for F4IP06
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-F4IP06-F1 | Predicted | AlphaFoldDB |
28 variants for F4IP06
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_2_15409409_G_A | 8 | P>S | No | 1000Genomes | |
| tmp_2_15409206_A_C | 29 | D>E | No | 1000Genomes | |
| tmp_2_15408969_A_T | 49 | H>Q | No | 1000Genomes | |
| ENSVATH01957001 | 93 | I>N | No | 1000Genomes | |
| ENSVATH13553040 | 100 | S>L | No | 1000Genomes | |
| ENSVATH05667669 | 115 | Y>D | No | 1000Genomes | |
| ENSVATH05667668 | 119 | D>N | No | 1000Genomes | |
| ENSVATH05667667 | 128 | N>K | No | 1000Genomes | |
| tmp_2_15408514_G_A | 139 | A>V | No | 1000Genomes | |
| tmp_2_15408407_T_C | 175 | T>A | No | 1000Genomes | |
| ENSVATH01956999 | 225 | V>L | No | 1000Genomes | |
| ENSVATH01956999 | 225 | V>M | No | 1000Genomes | |
| ENSVATH13553038 | 236 | R>W | No | 1000Genomes | |
| ENSVATH13553037 | 242 | G>R | No | 1000Genomes | |
| tmp_2_15407893_T_G | 257 | E>A | No | 1000Genomes | |
| ENSVATH05667661 | 259 | S>L | No | 1000Genomes | |
| ENSVATH13553024 | 261 | K>M | No | 1000Genomes | |
| ENSVATH13553023 | 263 | V>I | No | 1000Genomes | |
| ENSVATH05667657 | 268 | K>N | No | 1000Genomes | |
| tmp_2_15407740_C_T | 275 | G>E | No | 1000Genomes | |
| tmp_2_15407511_A_T | 280 | Y>N | No | 1000Genomes | |
| tmp_2_15407495_G_A | 285 | T>M | No | 1000Genomes | |
| ENSVATH00262429 | 294 | A>S | No | 1000Genomes | |
| ENSVATH00262429 | 294 | A>T | No | 1000Genomes | |
| tmp_2_15407229_T_A | 312 | K>I | No | 1000Genomes | |
| tmp_2_15407228_T_A | 312 | K>N | No | 1000Genomes | |
| tmp_2_15407197_C_T | 323 | V>M | No | 1000Genomes | |
| ENSVATH05667645 | 337 | P>S | No | 1000Genomes |
No associated diseases with F4IP06
2 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| Swr1 complex | A multisubunit protein complex that is involved in chromatin remodeling. It is required for the incorporation of the histone variant H2AZ into chromatin. In S. cerevisiae, the complex contains Swr1p, a Swi2/Snf2-related ATPase, and 12 additional subunits. |
No GO annotations of molecular function
| Name | Definition |
|---|---|
| No GO annotations for molecular function |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| cell differentiation | The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. |
| flower development | The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem. |
| histone exchange | The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits. |
| regulation of DNA-templated transcription | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEIDEEEPMV | FLDRTTRATR | GKRMTKLLDD | EVEEDEQFWN | QEALKEEEHD | DEYEAEREVA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| DEFDSDFNDD | EPEPDAVAVN | EKELRDLPKK | RLIYPGKTAS | KKKKKKTKVV | SQLEYIPGDE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KPGEELGNKE | QEEKEENEAQ | EDMEGEKVIR | KSTRTSVVVR | QAERDALRAA | IQATTKPIQR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| KKVGEEKRMT | QEEMLLEAAQ | TEIMNLRNLE | RVLAREEEVK | KKAIVHKAVY | KGPQIRYHSK |
| 250 | 260 | 270 | 280 | 290 | 300 |
| DGCNYLEFCN | GASFNSELST | KSVPYPEKAV | CVITGLPAKY | RDPKTGLPYA | TRDAFKAIRE |
| 310 | 320 | 330 | 340 | 350 | 360 |
| RFMDEHDGLR | KKMEMGDLFD | TLVAKGFATK | QKRTKIPKSN | KSFSLRSSAR | FLSSESEEES |
| EEDSD |