C9RLJ9
Gene name |
rho |
Protein name |
Transcription termination factor Rho |
Names |
ATP-dependent helicase Rho |
Species |
Fibrobacter succinogenes (strain ATCC 19169 / S85) |
KEGG Pathway |
fsu:Fisuc_2428 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for C9RLJ9
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-C9RLJ9-F1 | Predicted | AlphaFoldDB |
No variants for C9RLJ9
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for C9RLJ9 | |||||
No associated diseases with C9RLJ9
5 regional properties for C9RLJ9
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | 395 - 631 | IPR000194 |
| domain | AAA+ ATPase domain | 406 - 623 | IPR003593 |
| domain | Rho termination factor, RNA-binding domain | 287 - 364 | IPR011113 |
| domain | Cold shock domain | 291 - 357 | IPR011129 |
| domain | Transcription termination factor Rho, ATP binding domain | 392 - 675 | IPR041703 |
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
5 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP-dependent activity, acting on RNA | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction. |
| helicase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix. |
| hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| DNA-templated transcription termination | The completion of transcription: the RNA polymerase pauses, the RNA-DNA hybrid dissociates, followed by the release of the RNA polymerase from its DNA template. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MPRTPKNQNL | EQNTQTQSLT | DLVYPESTGI | PVPEYLGTVD | KLPDNTEEVP | QPKRRGRKPN |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PKTKARKEPA | LEQNVQAETE | PEFQEKKQPV | DGIAAAEKRL | AEQYGVANID | AIAEPIYTGE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| QNYKPAESTE | ENAFVSENTS | EAVIPQNGDM | AQAQAENQGE | VATDQNADPN | AQQQGEAQAQ |
| 190 | 200 | 210 | 220 | 230 | 240 |
| NGEGQDDRRF | NNQNGKFNKF | NKNNKFNKNN | RNNRNFQQQE | EFVDDSATLP | APGSEAILKA |
| 250 | 260 | 270 | 280 | 290 | 300 |
| KENWLKFRKL | SMSELQELAV | QKEVDFRRMR | KQSLNYILQS | LENEGNIIYT | EGVLEVTPQG |
| 310 | 320 | 330 | 340 | 350 | 360 |
| HGFLRMPDQN | YQTSADDVYV | SQNLIRKFNL | KIGDTIEGLV | RTPRDQDKYF | SMRRIDRVNF |
| 370 | 380 | 390 | 400 | 410 | 420 |
| EEPDKMRRRV | AFEYLTPIHP | EEKIHLEWNE | TEYSTRIMDL | FSPIGKGQRS | IILAPPRTGK |
| 430 | 440 | 450 | 460 | 470 | 480 |
| TVLLQNVTRA | IAKNHPEIIL | ITLLIDERPE | EVTEMRDIIT | DIKEKAAEKG | IEIKAEVVAS |
| 490 | 500 | 510 | 520 | 530 | 540 |
| TFDEPPEHHT | RVANMVLEKA | KRLVESQKDV | VILLDSITRF | ARANNVVIPH | SGKILSGGVD |
| 550 | 560 | 570 | 580 | 590 | 600 |
| ANAMQFPKKF | FGAARKIQDK | IRTVKNEDGT | ISEEVQKNGS | LTIIGTALIE | TGSRMDEVIF |
| 610 | 620 | 630 | 640 | 650 | 660 |
| EEFKGTGNME | LVLDRRIAEK | RIWPAIDVFK | SGTRKEERLL | TLLEQNAAWN | FRRGSQNETE |
| 670 | 680 | ||||
| TGIMENLLKL | MSKLKTNAEL | LAVLSKPKV |