C5BQH7

PR
Gene name
smpB
Protein name
SsrA-binding protein
Names
Small protein B
Species
Teredinibacter turnerae (strain ATCC 39867 / T7901)
KEGG Pathway
ttu:TERTU_3305
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

105-158 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for C5BQH7

Entry ID Method Resolution Chain Position Source
AF-C5BQH7-F1 Predicted AlphaFoldDB

No variants for C5BQH7

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for C5BQH7

No associated diseases with C5BQH7

6 regional properties for C5BQH7

Type Name Position InterPro Accession
domain SNF2, N-terminal 54 - 287 IPR000330
domain Helicase, C-terminal 325 - 481 IPR001650
domain Zinc finger, RanBP2-type 621 - 650 IPR001876
domain HNH endonuclease 1011 - 1051 IPR002711
domain HNH nuclease 995 - 1049 IPR003615
domain Helicase superfamily 1/2, ATP-binding domain 33 - 211 IPR014001

Functions

Description
EC Number
Subcellular Localization
  • Cytoplasm
  • The tmRNA-SmpB complex associates with stalled 70S ribosomes
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

1 GO annotations of molecular function

Name Definition
RNA binding Binding to an RNA molecule or a portion thereof.

1 GO annotations of biological process

Name Definition
trans-translation A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MAKKKTQNSN TIALNKKARH DYFIEERFEA GVSLAGWEVK ALRAGKGQLT DSYVIFKNGE
70 80 90 100 110 120
AWLLGAQIQP LPQASTHFVT DPTRTRKLLL HRKELTKLKE ATEQKGHTVV ATALYWKHHL
130 140 150
VKCEIATAKG KQLHDKRQTE KERDWNKQKQ RILQTNQR