B5ZTH4
Gene name |
dapF |
Protein name |
Diaminopimelate epimerase |
Names |
DAP epimerase, PLP-independent amino acid racemase |
Species |
Rhizobium leguminosarum bv trifolii (strain WSM2304) |
KEGG Pathway |
rlt:Rleg2_3748 |
EC number |
5.1.1.7: Acting on amino acids and derivatives |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for B5ZTH4
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-B5ZTH4-F1 | Predicted | AlphaFoldDB |
No variants for B5ZTH4
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for B5ZTH4 | |||||
No associated diseases with B5ZTH4
1 regional properties for B5ZTH4
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| active_site | Diaminopimelate epimerase, active site | 67 - 81 | IPR018510 |
Functions
| Description | ||
|---|---|---|
| EC Number | 5.1.1.7 | Acting on amino acids and derivatives |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| diaminopimelate epimerase activity | Catalysis of the reaction: LL-2,6-diaminopimelate = meso-2,6-diaminopimelate. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| lysine biosynthetic process via diaminopimelate | The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSATVEFARM | NGLGNKILVV | DMRGRPDKVT | PAAAVALNAD | PQTEFDQIMA | IHDPKADGTD |
| 70 | 80 | 90 | 100 | 110 | 120 |
| AFIDILNSDG | SKAQACGNGT | RCVVQALAAE | TGRKAFTFQT | VAGILNAVEH | EDGTISVDMG |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RPVFDWNRIP | LAEEFHDTSR | IELQIGPIDN | PVLHSPSAMS | MGNPHAIFWV | DRDVMSYDLA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| RFGPLLENHP | MFPERANITL | AQVTSPTSMT | TRTWERGAGL | TLACGSAACS | AAVSAARTGR |
| 250 | 260 | 270 | 280 | 290 | 300 |
| TGRKVTINVA | SAKPPATLSI | EWRERDDHVI | MTGPAEWEWS | GSLDPSTGLW | SRDGTQEAGA |
| R |