B1X3M8

PR
Gene name
rpoC2
Protein name
DNA-directed RNA polymerase subunit beta''
Names
DNA-directed RNA polymerase subunit beta', RNAP subunit beta', PEP, Plastid-encoded RNA polymerase subunit beta'', RNA polymerase subunit beta'', RNA polymerase subunit beta', Transcriptase subunit beta'
Species
Paulinella chromatophora
KEGG Pathway
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1241-1354 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for B1X3M8

Entry ID Method Resolution Chain Position Source
AF-B1X3M8-F1 Predicted AlphaFoldDB

No variants for B1X3M8

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for B1X3M8

No associated diseases with B1X3M8

2 regional properties for B1X3M8

Type Name Position InterPro Accession
domain RNA polymerase Rpb1, domain 5 204 - 1215 IPR007081
domain RNA polymerase Rpb1, domain 4 123 - 192 IPR007083

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, organellar chromatophore
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

3 GO annotations of cellular component

Name Definition
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.
organellar chromatophore A bacteroid-containing symbiosome in which the bacterial component is a genetically highly reduced cyanobacterium that is photosynthetically active and incapable of an independent existence outside its host. The chromatophore functions as a photosynthetic organelle, and has been found and characterized in the amoeba Paulinella chromatophora.
plastid Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

3 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
metal ion binding Binding to a metal ion.

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MTPSSNSVKT SRFNKVRTDI IGDTDLPNNL IKSLSKSPPH FYNHIIDKKG LRDIIAWAYK
70 80 90 100 110 120
SHGIAATAEL ADDIKDLGFK YATVAAVSIS IDDLKIPKEK KFLLEQAEEQ ITATEERYRL
130 140 150 160 170 180
GEITEVERHT KVIDTWTETN ERLVLAIKKN FNENDPLNSV WMMANSGARG NISQVRQLVG
190 200 210 220 230 240
MRGLMANPQG EIIDLPIRAN FKEGLTVTEY VISSYGARKG LVDTALRTAD SGYLTRRLVD
250 260 270 280 290 300
VAQDVIVRED DCGTERGIVV EADEKGNYGT KLVGRLAAQS VVVDNENRVL VRRNREIDLI
310 320 330 340 350 360
TACRIEAADI PSVIVRSPLT CEAARSVCRK CYGWALAHNA LVDLGEAVGI IAAQSIGEPG
370 380 390 400 410 420
TQLTMRTFHT GGVSTAETGL VRSTLEGSII FGSKARVRPY RTPHGVEAQQ AETDFVLQVK
430 440 450 460 470 480
PNNGKKSQKV DITNGSLLFV SDSQEVASDT ILAQIISGSS VKKSVEKATK DVICDLAGQV
490 500 510 520 530 540
RYDEALQPKE VIDRQGSATH KATRLGRVWV LSGDVYNLPP NAKPVIQGNS KVEEGEVLAE
550 560 570 580 590 600
SRLSSEHGGV VRLRESTGDS REVQIVTTSM TLKDFKLLGE STHSGEIWHL EAKDTTRYLL
610 620 630 640 650 660
KTQPGSKIGN GEVIAELADE RFRTKTGGLV KYAPGGLSIK KARSAKNGYE VNKGGTLLWI
670 680 690 700 710 720
PQETHEINKD ISLLMIEDGQ WIEDKTEVVK DIFSQIAGIV TVTQKNDILR EITVRPGTLY
730 740 750 760 770 780
PCNESKVIER FKGEGLLVDE EEIISKNLKA EKRVFVQSVE TSEGPQLLIR PVEEYTIPEV
790 800 810 820 830 840
AHLPELAIVK QNSGPYLGLK ATQRLNFKDG ELIKSVEGVE LLKTQLILET FDTTPQMTVD
850 860 870 880 890 900
VEKVTDKRSK TLERLQLVIL ETLLVRRDTI SDASHGSTHT ELQVNDGDLV KSGDVVATTQ
910 920 930 940 950 960
ILCKEVGIVQ LPKQIDNEPI RRIIVERDQD TMTIPLGSAP LVSVGQRLVD GDLLAENDPS
970 980 990 1000 1010 1020
PCCGQVETIK NNTIIIRIGR PYMISSDSTL HVKDRELVQR GDSLALLVFE RQKTGDIVQG
1030 1040 1050 1060 1070 1080
LPRIEELLEA RRPRDSAVLC KQPGVLTLRH DEETDSSIAV IKSANGEETE YPILLGRNLM
1090 1100 1110 1120 1130 1140
VSVGQHIKAG ELLTDGPINP HELLEYLFAD LRSRKPLMEA AREAIAKVQS RLVTEVQNVY
1150 1160 1170 1180 1190 1200
KSQGVTIHNK HIEVIVRQMT SKVRIEDAGE TTLLPGELIE LRHVEKVNKA MFMTSSSPAV
1210 1220 1230 1240 1250 1260
FIPELLGITK ASLNTDSFIS AASFQETTRV LTEAAIEGKT DYLRGLKENV IIGRLIPAGT
1270 1280 1290 1300 1310 1320
GFSGFEEELR SEAGPHPDIL DEDPAGYRRM QNLRPDYTVD MPAAASASPA ALLDDPSDDE
1330 1340 1350 1360 1370
LEATRSRHGI EVTTSNTAAF TRPVIVNKIM EDQILDPDII ASLQEEGLLT RE