A6VLD6
Gene name |
rimO |
Protein name |
Ribosomal protein S12 methylthiotransferase RimO |
Names |
S12 MTTase, S12 methylthiotransferase, Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase, Ribosome maturation factor RimO |
Species |
Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z) |
KEGG Pathway |
asu:Asuc_0405 |
EC number |
2.8.4.4: Transferring alkylthio groups |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for A6VLD6
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-A6VLD6-F1 | Predicted | AlphaFoldDB |
No variants for A6VLD6
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for A6VLD6 | |||||
No associated diseases with A6VLD6
6 regional properties for A6VLD6
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | TRAM domain | 378 - 444 | IPR002792 |
| domain | Elp3/MiaA/NifB-like, radical SAM core domain | 138 - 367 | IPR006638 |
| domain | Radical SAM | 4 - 443 | IPR007197 |
| domain | Methylthiotransferase, N-terminal | 6 - 116 | IPR013848 |
| conserved_site | Methylthiotransferase, conserved site | 142 - 162 | IPR020612 |
| domain | RimO, TRAM domain | 381 - 444 | IPR041582 |
Functions
| Description | ||
|---|---|---|
| EC Number | 2.8.4.4 | Transferring alkylthio groups |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| 4 iron, 4 sulfur cluster binding | Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
| metal ion binding | Binding to a metal ion. |
| protein methylthiotransferase activity | Catalysis of the reaction: 2 S-adenosyl-L-methionine + a |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid | The modification of peptidyl-aspartic acid to form peptidyl-L-beta-methylthioaspartic acid, typical of bacterial ribosomal protein S12. |
| tRNA modification | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MTHSVPNIGF | VSLGCPKNLV | DSERILTELR | SDGYNIIPTY | ENADLVIVNT | CGFIDSAVQE |
| 70 | 80 | 90 | 100 | 110 | 120 |
| SLEAIGEALE | ANGKVLVTGC | LGAKEDRIRE | VHPKVLEITG | PHSYEAVMEH | VHKYVPKPAY |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NPYINVVPSQ | GVKLTPKHYA | YLKISEGCDH | KCTFCIIPSL | RGDLDSRPIT | QILDEAKRLA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| DSGVKELLVV | SQDTSAYSLD | QSKETQNKTV | FWNGIPIKNN | LITLCQMLGT | LGVWVRLHYV |
| 250 | 260 | 270 | 280 | 290 | 300 |
| YPYPHVDDLI | PLMAAGKILP | YLDIPLQHAS | PKILKAMKRP | GSVERVLERI | KNWREICPEL |
| 310 | 320 | 330 | 340 | 350 | 360 |
| TLRSTFIVGF | PGETEEDFQL | LLDFLKEAQL | DRVGCFKFSP | VDGATATDMP | DQVPEEVKEE |
| 370 | 380 | 390 | 400 | 410 | 420 |
| RFQRFMQLQQ | EISAARLQQK | IGKTWKVIVD | EIDEEGIIGR | SMADAPEIDG | VVYVDNVGQS |
| 430 | 440 | ||||
| AVRIGDIIDV | RITRADEYDL | WGTC |