A6V8R6
Gene name |
rnd |
Protein name |
Ribonuclease D |
Names |
RNase D |
Species |
Pseudomonas aeruginosa (strain PA7) |
KEGG Pathway |
pap:PSPA7_4097 |
EC number |
3.1.13.5: Exoribonucleases producing 5'-phosphomonoesters |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for A6V8R6
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-A6V8R6-F1 | Predicted | AlphaFoldDB |
No variants for A6V8R6
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for A6V8R6 | |||||
No associated diseases with A6V8R6
Functions
| Description | ||
|---|---|---|
| EC Number | 3.1.13.5 | Exoribonucleases producing 5'-phosphomonoesters |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| 3'-5' exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. |
| nucleic acid binding | Binding to a nucleic acid. |
| nucleotide binding | Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
| ribonuclease D activity | Catalysis of the exonucleolytic cleavage that removes extra residues from the 3'-terminus of tRNA to produce 5'-mononucleotides. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| tRNA 3'-end processing | The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MFVTAPEIQW | IRDDASLAQQ | CREWRTQPYL | ALDTEFMRVD | TFYPAAGLVQ | VGDGRREWLI |
| 70 | 80 | 90 | 100 | 110 | 120 |
| DPLLVRDWGP | FAELLEDPRV | VKVLHACSED | LEVFLRLTGS | LPVPLFDTQL | AAAYLGMAHS |
| 130 | 140 | 150 | 160 | 170 | 180 |
| MGYSKLVKEV | LDIDLPKDET | RSDWLQRPLT | EMQMRYAADD | VQHLAQVYLA | LDARLSEEKR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| AWLLEDGAEL | VANLCRESDP | REAYREVKLG | WRLRPQQLAV | LRELCAWREE | QARLRNRPRN |
| 250 | 260 | 270 | 280 | 290 | 300 |
| HVLRERTLWP | LARLLPKNKT | DLAAIEDMHP | RTVRQDGDFL | IELIAEAARL | PQSEWPEALP |
| 310 | 320 | 330 | 340 | 350 | 360 |
| EPLPPEVTPL | LKSLRAIGQR | EAETLGMAPE | LMLRKKILEA | LLKSGYPHGP | YELPDSLRGW |
| 370 | |||||
| RRERMGQALL | NALESA |