A6MVX4

PR
Gene name
rpoB
Protein name
DNA-directed RNA polymerase subunit beta
Names
PEP, Plastid-encoded RNA polymerase subunit beta, RNA polymerase subunit beta
Species
Rhodomonas salina (Cryptomonas salina)
KEGG Pathway
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

351-423 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for A6MVX4

Entry ID Method Resolution Chain Position Source
AF-A6MVX4-F1 Predicted AlphaFoldDB

No variants for A6MVX4

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for A6MVX4

No associated diseases with A6MVX4

3 regional properties for A6MVX4

Type Name Position InterPro Accession
domain RNA polymerase, alpha subunit, C-terminal 251 - 312 IPR011260
domain DNA-directed RNA polymerase, insert domain 60 - 156 IPR011262
domain DNA-directed RNA polymerase, RpoA/D/Rpb3-type 21 - 231 IPR011263

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, chloroplast
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.

3 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
ribonucleoside binding Binding to a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MSSTKLSTSI LPDLVEIQRA SFCWFLEEGL AEEIKSFSPI TDYTGNLELH FFGDQFKLKC
70 80 90 100 110 120
PKYNLLESKR RDATYSVQVY VPARLINRDT GIIKEQEVFI GDLPLMTDRG TFIINGAERV
130 140 150 160 170 180
IVNQIVRSPG IYYKSETDRQ GRRTYSGSLI SNRGAWVKFE TDRNDLVWVR IDKTRKIPAH
190 200 210 220 230 240
VFLKAMGLSD SDIYNGLRHP EYLKKSFRVE GNYTTEEALI QMYTKLRPGE PATVNGGQQI
250 260 270 280 290 300
LYSRFFDPKR YDLGKVGRYK INKKLALSIP ENIKVLTPQD TLSAIDYLIN LKFNIGETDD
310 320 330 340 350 360
IDHLGNRRVR SVGELLQNQV RVGLNRLERI IRERMTICDS ESLAPNTLVN PKPIIAAIRE
370 380 390 400 410 420
FFGSSQLSQF MDQTNPLAEL THKRRISALG PGGLNRDRAG FAVRDIHPSH YGRICPIETP
430 440 450 460 470 480
EGPNAGLIGV LATHARINSY GFIETPFYQV INGKVVSDGN PVYLTADQED NFRIAPGDIA
490 500 510 520 530 540
IDENNAINND IVPVRYRQEF TITKPEQIDY IQVSPIQVIS IATSLIPFLE HDDANRALMG
550 560 570 580 590 600
SNMQRQAVPL LYPESPLIGT GIEAQAARDS GMVVVSYQDG RVTYVSANKI CITDDEGKEV
610 620 630 640 650 660
VYYLQKYQRS NQDTCINQRP SVWLGEKVVA GQVIADGAAT EGGELALGQN ILIAYLPWEG
670 680 690 700 710 720
YNYEDAFLIS ERLVYNDVYT SVHIEKYEIE ARQTKLGSEE ITRELPNIGE YSLRKLDDNG
730 740 750 760 770 780
IIVIGSWVEV GDILVGKVTP KGESDQPPEG KLLRAIFGEK ARDVRDTSLR VPNGGRGRVL
790 800 810 820 830 840
DVRIFTREKG DELPTGANIV IRVYVAQTRK IQVGDKMAGR HGNKGIISRI LPRQDMPYLP
850 860 870 880 890 900
DGTPVDLVLN PLGVPSRMNV GQIFECLLGL AAENLDKRFK IIPFDEMNGA EASRVLVNEK
910 920 930 940 950 960
LMEARTLTEK DWIFDLRHPG KTQLFDGRTG EAFDNPVTVG ISYMLKLVHL VDDKIHARST
970 980 990 1000 1010 1020
GPYSLVTQQP LGGKAQHGGQ RLGEMEVWAL EAFGASYTLQ ELLTVKSDDM QGRNETLNAI
1030 1040 1050 1060 1070 1080
VKGKPIPRPG TPESFKVLMR ELQSLGLDIG AYKIENLPDG QTRGIEVDLM SNLHNRRVPS
1090
RPTYESITRE DLENSFA