A6MVX2

PR
Gene name
rpoC2
Protein name
DNA-directed RNA polymerase subunit beta''
Names
PEP, Plastid-encoded RNA polymerase subunit beta'', RNA polymerase subunit beta''
Species
Rhodomonas salina (Cryptomonas salina)
KEGG Pathway
EC number
2.7.7.6: Nucleotidyltransferases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1217-1291 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for A6MVX2

Entry ID Method Resolution Chain Position Source
AF-A6MVX2-F1 Predicted AlphaFoldDB

No variants for A6MVX2

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for A6MVX2

No associated diseases with A6MVX2

3 regional properties for A6MVX2

Type Name Position InterPro Accession
domain RNA polymerase Rpb1, domain 5 177 - 445 IPR007081-1
domain RNA polymerase Rpb1, domain 5 1097 - 1187 IPR007081-2
domain RNA polymerase Rpb1, domain 4 96 - 173 IPR007083

Functions

Description
EC Number 2.7.7.6 Nucleotidyltransferases
Subcellular Localization
  • Plastid, chloroplast
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
DNA-directed RNA polymerase complex A protein complex that possesses DNA-directed RNA polymerase activity.

3 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
zinc ion binding Binding to a zinc ion (Zn).

1 GO annotations of biological process

Name Definition
DNA-templated transcription The synthesis of an RNA transcript from a DNA template.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MKEKYLFIPP KPKFTNKTID KKELKKLMAW AFSNYGTGRA SYLADKIKDL GFQYATKAGL
70 80 90 100 110 120
SLSVEDLRVP PTKRELLKRT NEEINLTQQK YERGEITTVE RFQKVIDTWN NASEELKDEV
130 140 150 160 170 180
VKYFKETDPL NTIYIMAFSG ARGNISQVRQ LVGMRGLMAD PQGQIIDLPI KSNFREGLTV
190 200 210 220 230 240
TDYIISSYGA RKGLVDTALR TADSGYLTRR LVDVAQDIII REIDCDTDRG ILLKDMVSNN
250 260 270 280 290 300
QILIPLQNRL LGRVLFETLH SPDSANVIAH INQDLDHNTA EFIVKSGIKS VIVRSPLTCE
310 320 330 340 350 360
SSRSVCQFCY GWNLAHGSLV DLGEAVGIIA AQSIGEPGTQ LTMRTFHTGG VFTGELAEQI
370 380 390 400 410 420
RAPFDGVLRI PKSFRTRLIR TRHGEEAFVL EDSYKLDLYD SSYKKHKIEF KQGTILFLND
430 440 450 460 470 480
NEQFKKSQVI GELSTKSSMI TERVTKDLNT ENSGEVCFSN LYIEEKIDRQ GNSITNTPKG
490 500 510 520 530 540
GCLWILSGEV YNLPSYADIK IKEKQFVEED EVLATSKVIS DYGGLVRLNQ SNQTSNITEL
550 560 570 580 590 600
QIVTSSVSLD NATIVTDDQK STNSDPSYTL EMECGIKFHM LCSPGNKIVN SQIIAELIDT
610 620 630 640 650 660
KYQTSTGGIV KYDGFEVNKK NKNKKGYEIL GEGALLWIPE ETHEINKDIS LLLVEEGQCI
670 680 690 700 710 720
TAGTQIVKEL YSLTEGYIQI IQENEIVKEV IVKPGKEHVR STTSNNLNEY PKIVKPNDPD
730 740 750 760 770 780
YAEYNAQGTI YIEELHYKKG NALLIRPVIE FRIDNEKIDL KTNYLTNENH HITIKPTKRV
790 800 810 820 830 840
LFKDGQRVKS KYGVDLLKTY LIMSVDFDKP HLSADVEFVP AHEDDIYKLH LTVLETLQIK
850 860 870 880 890 900
QDDFGESKKK STITSLCVKQ NELIKAGSTV AETHLLAHSA GFVQSINQTS QSTCKVLILT
910 920 930 940 950 960
NSDEKSIDIY NQTPQVSQGD FIRSGDQIAN GIIAETSGQI VEIETNKIKI RSGTPYLVSS
970 980 990 1000 1010 1020
NAILQVKNGN LVETGDTLAI LVFERSKTGD IVQGLPRIEE ILEARKPKEP SKLSQRPGKI
1030 1040 1050 1060 1070 1080
TLNYDSEDNK CIRILSSNGE YNEYIMSGIQ KIIVSNGENI LLAEPITDGA PNPHEMLGLF
1090 1100 1110 1120 1130 1140
FNFYKERMPL YEAAKLALQK VQIYLVNEVQ NVYQSQNVDI SDKHIEVIVR QMTSKVKVED
1150 1160 1170 1180 1190 1200
GGDTTLLPGE LVELQQIENI NEAMTLTKGL PARYSPVLLG ITKSSLNTDS FISAASFQET
1210 1220 1230 1240 1250 1260
TRVLTEAAIE GKADWLRGLK ENVIIGRLIP AGTGFNSYND ISKSFVLEKK NQMPDSYEQN
1270 1280 1290 1300
QNEEQNIEDI ILDDNIARNY ALIENPINNF DTIEQNINQS KDI