A6L227
Gene name |
rny |
Protein name |
Ribonuclease Y |
Names |
RNase Y |
Species |
Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) (Bacteroides vulgatus) |
KEGG Pathway |
bvu:BVU_2078 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for A6L227
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-A6L227-F1 | Predicted | AlphaFoldDB |
No variants for A6L227
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for A6L227 | |||||
No associated diseases with A6L227
6 regional properties for A6L227
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | HD/PDEase domain | 332 - 438 | IPR003607 |
| domain | K Homology domain | 208 - 275 | IPR004087 |
| domain | K Homology domain, type 1 | 214 - 270 | IPR004088 |
| domain | HD domain | 336 - 429 | IPR006674 |
| domain | HDIG domain | 332 - 409 | IPR006675 |
| domain | Ribonuclease Y, N-terminal | 6 - 205 | IPR022711 |
2 GO annotations of cellular component
| Name | Definition |
|---|---|
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| endoribonuclease activity | Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| mRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MITTVIIAIV | CFAVGGGLSY | MLFRYGLKSK | YDIIIKEAQT | EAEVIKKNKL | LEVKEKFLNK |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KADLEKEVAL | RNQKIQQAEN | KLKQRELMLN | QKQEEVQRKR | TEAEAIKENL | EAQIVIIDKK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KDELDKLQMQ | EREKLEALSG | LSAEEAKERL | IESLKEEAKT | QAASYINDIM | DDAKLTANKE |
| 190 | 200 | 210 | 220 | 230 | 240 |
| AKRIVIQSIQ | RVATETAIEN | SVTVFHIESD | EIKGRIIGRE | GRNIRALEAA | TGVEIVVDDT |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PEAIVLSAFD | PVRREIARLA | LHQLVTDGRI | HPARIEEVVA | KVRKQVEEEI | IETGKRTTID |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LGIHGLHPEL | IRIIGKMKYR | SSYGQNLLQH | ARETANLCAV | MASELGLNPK | KAKRAGLLHD |
| 370 | 380 | 390 | 400 | 410 | 420 |
| IGKVPDEEPE | LPHALLGMKI | AEKYKEKPDI | CNAIGAHHDE | TEMTSLLAPI | VQVCDAISGA |
| 430 | 440 | 450 | 460 | 470 | 480 |
| RPGARREIVE | AYIKRLNDLE | QLAMSYPGVT | KTYAIQAGRE | LRVIVGADKI | DDKQTESLSG |
| 490 | 500 | 510 | |||
| EIAKKIQDEM | TYPGQVKITV | IRETRAVSFA | K |