A5V3L8

PR
Gene name
smpB
Protein name
SsrA-binding protein
Names
Small protein B
Species
Rhizorhabdus wittichii (strain DSM 6014 / CCUG 31198 / JCM 15750 / NBRC 105917 / EY 4224 / RW1) (Sphingomonas wittichii)
KEGG Pathway
swi:Swit_0516
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

107-160 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for A5V3L8

Entry ID Method Resolution Chain Position Source
AF-A5V3L8-F1 Predicted AlphaFoldDB

No variants for A5V3L8

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for A5V3L8

No associated diseases with A5V3L8

9 regional properties for A5V3L8

Type Name Position InterPro Accession
domain Sterile alpha motif domain 790 - 856 IPR001660
repeat Mbt repeat 20 - 123 IPR004092-1
repeat Mbt repeat 128 - 235 IPR004092-2
repeat Mbt repeat 242 - 349 IPR004092-3
repeat Mbt repeat 354 - 453 IPR004092-4
domain SLED domain 499 - 613 IPR021987
domain Scm-like with four MBT domains protein 1/2, SAM domain 779 - 863 IPR037604
repeat Scm-like with four MBT domains protein 1, third MBT repeat 271 - 364 IPR047351
repeat Scm-like with four MBT domains protein 1, second MBT repeat 159 - 255 IPR047352

Functions

Description
EC Number
Subcellular Localization
  • Cytoplasm
  • The tmRNA-SmpB complex associates with stalled 70S ribosomes
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

1 GO annotations of molecular function

Name Definition
RNA binding Binding to an RNA molecule or a portion thereof.

1 GO annotations of biological process

Name Definition
trans-translation A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MARPRPAEFE KKKVVAENRR ARFDYFLEQF FEAGIALTGT EVKSLRFGEG SIAESYAEVK
70 80 90 100 110 120
DDQVWLVNSN VPEFSHGNRF NHEPKRPRKL LLHAREIDKM RNGVSREGMT LIPLSIYFNG
130 140 150
RGRAKVELAL AKGKKLHDKR DTEKERDWKR EQQRLLRDRG