A5F9B5
Gene name |
recA |
Protein name |
Protein RecA |
Names |
Recombinase A |
Species |
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) |
KEGG Pathway |
vcr:VC395_0560 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for A5F9B5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-A5F9B5-F1 | Predicted | AlphaFoldDB |
No variants for A5F9B5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for A5F9B5 | |||||
No associated diseases with A5F9B5
4 regional properties for A5F9B5
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | AAA+ ATPase domain | 58 - 229 | IPR003593 |
| conserved_site | DNA recombination/repair protein RecA, conserved site | 214 - 222 | IPR020584 |
| domain | DNA recombination and repair protein RecA, monomer-monomer interface | 200 - 273 | IPR020587 |
| domain | DNA recombination and repair protein RecA-like, ATP-binding domain | 36 - 195 | IPR020588 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP-dependent DNA damage sensor activity | A molecule that recognises toxic DNA structures, and initiates a signalling response, driven by ATP hydrolysis. |
| damaged DNA binding | Binding to damaged DNA. |
| single-stranded DNA binding | Binding to single-stranded DNA. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
| DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
| SOS response | An error-prone process for repairing damaged microbial DNA. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MDENKQKALA | AALGQIEKQF | GKGSIMRLGD | NRAMDVETIS | TGSLSLDIAL | GAGGLPMGRI |
| 70 | 80 | 90 | 100 | 110 | 120 |
| VEIFGPESSG | KTTLTLELIA | AAQREGKTCA | FIDAEHALDP | VYAKKLGVNI | DELLVSQPDT |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GEQALEICDA | LARSGAVDVI | VVDSVAALTP | KAEIEGEMGD | SHMGLQARML | SQAMRKLTGN |
| 190 | 200 | 210 | 220 | 230 | 240 |
| LKQSNCMCIF | INQIRMKIGV | MFGNPETTTG | GNALKFYASV | RLDIRRTGAI | KEGEEVVGNE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| TRIKVVKNKI | AAPFKEANTQ | IMYGQGFNRE | GELIDLGVKH | KMVEKSGAWY | SYNGDKIGQG |
| 310 | 320 | 330 | 340 | 350 | |
| KANACKYLKE | NPEIAKTLDK | KLREMLLNPE | NMQLTGETAS | AADDVEFGAV | PEEF |