A5F514
Gene name |
rimO |
Protein name |
Ribosomal protein S12 methylthiotransferase RimO |
Names |
S12 MTTase, S12 methylthiotransferase, Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase, Ribosome maturation factor RimO |
Species |
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) |
KEGG Pathway |
vcr:VC395_2733 |
EC number |
2.8.4.4: Transferring alkylthio groups |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for A5F514
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-A5F514-F1 | Predicted | AlphaFoldDB |
No variants for A5F514
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for A5F514 | |||||
2 associated diseases with A5F514
[MIM: 265100]: Pulmonary alveolar microlithiasis (PULAM)
Rare disease characterized by the deposition of calcium phosphate microliths throughout the lungs. Most patients are asymptomatic for several years or even for decades and generally, the diagnosis is incidental to clinical investigations unrelated to the disease. Cases with early-onset or rapid progression are rare. A 'sandstorm-appearing' chest roentgenogram is a typical diagnostic finding. The onset of this potentially lethal disease varies from the neonatal period to old age and the disease follows a long-term, progressive course, resulting in a slow deterioration of lung functions. Pulmonary alveolar microlithiasis is a recessive monogenic disease with full penetrance. {ECO:0000269|PubMed:16960801}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- Rare disease characterized by the deposition of calcium phosphate microliths throughout the lungs. Most patients are asymptomatic for several years or even for decades and generally, the diagnosis is incidental to clinical investigations unrelated to the disease. Cases with early-onset or rapid progression are rare. A 'sandstorm-appearing' chest roentgenogram is a typical diagnostic finding. The onset of this potentially lethal disease varies from the neonatal period to old age and the disease follows a long-term, progressive course, resulting in a slow deterioration of lung functions. Pulmonary alveolar microlithiasis is a recessive monogenic disease with full penetrance. {ECO:0000269|PubMed:16960801}. Note=The disease is caused by variants affecting the gene represented in this entry.
No regional properties for A5F514
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for A5F514 | |||
Functions
| Description | ||
|---|---|---|
| EC Number | 2.8.4.4 | Transferring alkylthio groups |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| 4 iron, 4 sulfur cluster binding | Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
| metal ion binding | Binding to a metal ion. |
| protein methylthiotransferase activity | Catalysis of the reaction: 2 S-adenosyl-L-methionine + a |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid | The modification of peptidyl-aspartic acid to form peptidyl-L-beta-methylthioaspartic acid, typical of bacterial ribosomal protein S12. |
| tRNA modification | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. |
No homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| No homologous proteins | ||||
| 10 | 20 | 30 | 40 | 50 | 60 |
| MTVQTFTPNQ | TTTLETAKKT | IAEQSQNSQT | TGNKIGFVSL | GCPKNLVDSE | RILTQLRTEG |
| 70 | 80 | 90 | 100 | 110 | 120 |
| YEIVNSYHDS | DVVIVNTCGF | IDSAVQESLD | TIGEALKENG | KVIVTGCLGA | REDEIRQVHP |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NVLGITGPHA | YQNVLEHVHQ | YAPKPAHNPF | TSLVPDHGVK | LTPKHYAYLK | ISEGCNHRCT |
| 190 | 200 | 210 | 220 | 230 | 240 |
| FCIIPSMRGD | LVSRPVGEII | GEAERLKNAG | VKELLVISQD | TSAYGVDTKH | SLGFANGSPV |
| 250 | 260 | 270 | 280 | 290 | 300 |
| RHNIKALSEE | LGKMGIWVRL | HYVYPYPHVD | EIIPLMAEGK | VLPYLDIPFQ | HASPRVLKMM |
| 310 | 320 | 330 | 340 | 350 | 360 |
| KRPGQAERTL | ERIKKWREIC | PELVIRSTFI | VGFPGETEED | FQILLDWLKE | AQLDRVGCFK |
| 370 | 380 | 390 | 400 | 410 | 420 |
| YSPVEGAAAN | EIEDQIPEDV | KQDRFERFML | VQQEISAAKL | QKRIGSTMQV | LIDEVDDEGA |
| 430 | 440 | 450 | 460 | ||
| IGRTYADAPE | IDGLVYLNGE | TNLKPGELVN | VVIEHADEYD | LWGSVLHDAQ |